You can get clear coat touch-up stuff at any auto parts store or the dealer. If you don't apply the clear, your touch up will not 'shine' like the rest of the paint, as the base color is sort of flat/semigloss. Be careful what kind of clear you get though, some are better and easier to work with that others. Call around and ask some paint shops.
------------------
2001 SE 4x4 5-speed
Super Black