The crossover is built into the factory amp below the radio.(i.e 4pairs of wires go in, 6 pairs come out) I would say skip the aftermarket crossover and use the factory one. Just plug the woofer and tweeter into the factory wires at each location.
I didn't keep my factory stuff long enough to find out if the wires going to the woofer carry the high frequencies for a tweeter. If they do, you could use that set to run the aftermarket crossover...