Automatic accepts larger tires easier...the built in slip makes the change less harsh on driveline components.
Automatic is a little easier on the drivetrain...also due to the inherent slip.
Automatic is easier to drive onroad and offroad ( with stock gearing and tranfercase ratio )...once you get low crawl ratios with transfercase and gears the manual is easy ( doesn't stall as easy on climbs with low low gearing ).
Stock vs Stock an automatic will have a lower crarl ratio ( 1.5 to 2.0 x the manual crawl ratio ).
Manuals can be push started if the starter goes south...automatic you are usually stuck.
Manuals give a little better wheelspeed control...Autos slip can throw you off a little.
Manual will still usally go into a gear or two even when they break...Autos will leave you stranded ( some have a limp home mode but it doesn't work in all situations ).
Gear Ratios in Manuals can be changed...Autos are all computer controlled these days and can't be changed ( granny gears for instance ).
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Ok, ya'll are too kind...I can only have 3 Xterras under my moniker...Please, no more votes...my garage is not big enough!