Ah, sorry. I though your JL was DVC and your amp was mono. Since you have 2 channels out from your amp, you can only hookup one pair of wires to the JL sub. Hooking both positives to the JL positive post and both negatives to the JL negative post will definitely blow the fuse.
A better way would be to bridge the two sub channels on the amp and then hook it up to the JL but I'm not sure if the factory amp is capable of that. Anyone know?